PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG062100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 278aa    MW: 29443.4 Da    PI: 6.3118
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG062100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.5e-08127171554
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  Pavir.2NG062100.1.p 127 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 171
                          99***********************7.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.5E-15120181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.61E-10120176No hitNo description
PROSITE profilePS5088815.77122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-14124182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-6127171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MAGQPPPPGG AEDDFLEHFF AFPSAASAGA GGGHAGAGDG GDHPFPLALS LDAAAEASAK  60
QDRDPVQLAG LFPPVFGGGV QQPHLRGPPP PQMFHAQPKP GEGAMAPQPP APRPKVRARR  120
GQATDPHSIA ERLRRERIAE RMRALQELVP NTNKTDRAAM LDEILDYVKF LRLQVKVLSM  180
SRLGGAGAVA QLVSDIPLSV KGEASDSGST QQIWEKWSTD GTEKQVAKLM EEDIGAAMQF  240
LQSKALCMMP ISLAMAIYDT QHPQDGHSLK PEPNTSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131136RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.23770.0callus| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0383410.0BT038341.1 Zea mays full-length cDNA clone ZM_BFb0227N15 mRNA, complete cds.
GenBankEU9658460.0EU965846.1 Zea mays clone 289335 BHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461549.11e-171hypothetical protein SORBIDRAFT_02g004570
SwissprotO227682e-77UNE12_ARATH; Transcription factor UNE12
TrEMBLC5XB281e-171C5XB28_SORBI; Putative uncharacterized protein Sb02g004570
STRINGSb02g004570.11e-170(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.35e-65bHLH family protein